bioos-mcp-server

bioos-mcp-server

3
developer_toolscloud_platforms

Bio-OS MCP Server is a tool that facilitates workflow management and Docker image building via a Model Context Protocol. It offers both standalone and cloud deployment options, with robust integration with VSCode through the CLINE extension.

Bio-OS MCP Server

A Model Context Protocol (MCP) based tool and prompt server for Bio-OS with workflow management and Docker image building capabilities.

Usage

  • Two deployment options: standalone installation or using Code Server in Miracle Cloud IES.
  • Interaction via CLINE extension for VSCode recommended.

Local Installation

  • Requires uv and Cromwell as dependencies.
  • Configuration of the script path in CLINE's settings.

Cloud Installation

  • Pre-configured Docker image available for Miracle Cloud users.
  • Configuration involves verifying connection in CLINE and copying custom instruction prompts.

Features

  • Workflow Management: Submit/monitor workflows, upload/validate WDL scripts, generate input templates.
  • Docker Image Management: Build images, check status, monitor progress, and retrieve logs.

Contributing

Issues and Pull Requests are welcome.

License

MIT License