scanpy-mcp
6
Scanpy MCP server is a Model Context Protocol server designed for scRNA-Seq analysis using Scanpy with a focus on natural language usage. It provides modules for data IO, preprocessing, and visualization, all tailored for AI clients and agent frameworks.
Scanpy MCP server
An MCP server for scRNA-Seq analysis software Scanpy using natural language.## 🪩 What can it do?
- IO module for reading and writing scRNA-Seq data
- Preprocessing module including filtering, quality control, normalization, scaling, PCA
- Tool module for clustering, differential expression
- Plotting module for creating violin, heatmap, dotplot## ❓ Who is this for?
- Users wanting to perform scRNA-Seq analysis via natural language
- Agent developers utilizing Scanpy functions## 🌐 Where to use it?
- AI clients, plugins, or agent frameworks supporting MCP
- Cherry Studio, Cline, Agno