scmcp
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SCMCP is an MCP server designed for single-cell RNA sequencing (scRNA-Seq) analysis using natural language. It offers modules for data input/output, preprocessing, cell communication, and various plotting options, making it ideal for agent developers and users looking to integrate these capabilities into AI clients or plugins.
SCMCP
An MCP server for scRNA-Seq analysis using natural language.
What can it do?
- IO module for reading and writing scRNA-Seq data with natural language
- Preprocessing, including filtering, quality control, normalization
- Tools for clustering and differential expression
- Plotting with violin, heatmap, and dotplot
- Cell-cell communication analysis
Who is this for?
- Users interested in scRNA-Seq analysis through natural language
- Agent developers integrating scanpy functions
Where to use it?
- AI clients like Cherry Studio
- Plugins such as Cline
- Agent frameworks like Agno
Demo
A demo shows scRNA-Seq cell cluster analysis in Cherry Studio using SCMCP
Quickstart
Install from PyPI. Run locally or remotely for integration with MCP clients.