PubTator-MCP-Server

PubTator MCP Server is a tool designed for mining and annotating biomedical literature through an MCP interface, allowing AI models to programmatically search and analyze scientific literature. It offers features like literature annotation export, entity ID lookup, relationship mining, and batch processing to efficiently handle annotation tasks.

export_publications

Export PubTator annotation results for the specified PMID document

find_entity_id

Query standard identifiers for biological concepts through free text

find_related_entities

Find other entities related to the specified entity

search_pubtator

Search for PubTator database

batch_export_from_search

Search and batch export document annotations