mcp_pride_archive_search

mcp_pride_archive_search

2
research_and_data

The MCP PRIDE Archive Search Server is an MCP-compliant API server designed for interaction with proteomics datasets. It facilitates AI models in performing structured searches within the PRIDE Archive, supporting various connection modes and integration with major LLMs.

🧬 MCP PRIDE Archive Search Server

This project implements a Model Context Protocol (MCP)-compliant API server that allows AI models to interact with proteomics datasets programmatically. It offers tools to search the PRIDE Archive by keyword, submission date, and more, supporting both http and stdio connection modes. The server is easily extendable and integrates with various LLMs for biomedical research.

🚀 Features

  • MCP Server powered by FastMCP
  • Search tool for PRIDE Archive datasets
  • AI-friendly tools for proteomics research
  • Supports http (SSE) and stdio connection modes
  • Easily extendable with additional tools

📦 Installation

Clone the repository and install dependencies.

👨‍💻 Usage

Start the MCP server with your preferred connection type (http or stdio).

🔧 Tool APIs

search_archive_tool(...)

Fetches proteomics datasets from the PRIDE Archive database.

🤝 Integration with LLMs

Works with any LLM supporting Model Context Protocol.