decoupler-mcp
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Decoupler-MCP provides a natural language interface for conducting scRNA-Seq analysis through the Model Context Protocol. It supports various features like data reading, pathway inference, clustering, and plotting, making scRNA-Seq analysis more accessible.
Overview
Natural language interface for scRNA-Seq analysis with decoupler through MCP.
What can it do?
- IO module like read and write scRNA-Seq data
- Pathway activity/Transcription factor inference
- Tool module, like clustering, differential expression
- Plotting module, like violin, umap/tsne
Who is this for?
- Anyone who wants to do scRNA-Seq analysis with natural language
- Agent developers who want to use decoupler functions in their applications
Where to use it?
You can use decoupler-mcp in AI clients, plugins, or agent frameworks that support MCP, such as Cherry Studio, Cline, and Agno.
Demo
A demo showing scRNA-Seq cell cluster analysis in an AI client Cherry Studio using natural language based on decoupler-mcp.