PubChem-MCP-Server

PubChem-MCP-Server

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The PubChem MCP Server allows AI assistants to interface with PubChem's chemical database using the Model Context Protocol (MCP). It enables the search and retrieval of detailed chemical compound information, including molecular structures and properties, for programmatic use. This server provides a streamlined way for AI systems to leverage chemical data effectively.

search_pubchem_by_name

Search by compound name

search_pubchem_by_smiles

Search by SMILES string

get_pubchem_compound_by_cid

Get compound details through CID

search_pubchem_advanced

Advanced search (multiple parameters can be combined)